Name
copy_trans_angles_a - copy SPIDER 3D reconstruction paramters from a single text file.
Usage
copy_trans_angles_a(par_list,sp_stack,hdf_stack,new_dim,voltage,Pixel_size,ctf_mul,amp_contrast=.1,cs=2,deci=1,verify=1,symmetry="c1",
- m_radius=0,fmat="a",skip="C")
Input
- par_list
- a list of attribute parameters
- voltage
- accelerating electron voltage
- Pixel_size
- pixel size of the micrograph
- amp_contrast
- amplitude contrast ratio
- cs
- spherical abberation constant in mm.
- symmetry
- symmetry of the 3D volume.
- sp_stack
- input single stack file.
Output
- hdf_stack
Options
- deci
- decimation ratio of particles in stack file
- verify
- verify the output if set as 1.
- new_dim
- the new dimension for the particles in hdf stck file
- m_radius
- mask radius for verification 3D reconstruction.
- fmat
- file format of input text file. "a" indicates arbitary file
- skip
- "C" commented lines are skipped when the input is read in.
Description
dodofil will take the input image and multiply it by par1 while checking whether par2 is nonzero.
Method
Reference
Author / Maintainer
- Zhong Huang
Keywords
- category 1
- UTILITIES
Files
- utilities.py
See also
References to relevant other routines.
Maturity
- alpha
- crashes and nobody knows why, works but results are incorrect, works for author but noone else
- beta
- works for author, often works for others.
- stable
- works for most people, has been tested; test cases/examples available.
Bugs
None. It is perfect.